Idani A, Bibi-Triki S, Stemmelen T, Radosavljevic M, Grenot P, Hirschler A, Bernard A, Rosenzwajg M, Yang J, Eischen A, Naegely L, Macquin C, Pichot A, Spinnhirny P, Hanauer A, Alipour-Olayei N, Cherrier T, Kolmer A, Paul N, Olson RJ, Morava E, Miao Z, Carapito C, Rostami P, Parvaneh N, Shahrooei M, Molitor A, Carapito R, Bahram S

J Hum Immun. 2026 11 2;2(6):

ER proteostasis failure in HYOU1 deficiency alters B cells, neutrophils, and interferon signalling.

J Hum Immun. 2026 11 2;2(6):e20250234

Sulfur source-driven global remodeling of gene expression in the fuel-biodesulfurizing IGTS8.

El Nayal A, Sangal V, Alioua A, Hirschler A, Koechler S, Heintz D, Carapito C, Van Dorsselaer A, Ismail W

Appl Environ Microbiol. 2026 09 23;:e0154926

narrowPASEF: A Sample-Aware diaPASEF Method Optimization Strategy Improving Differential Proteomics Performance on Low-Abundance Proteins.

Rijal JB, Askar IC, Hirschler A, Declercq A, Martens L, Schaeffer-Reiss C, Bagnard D, Carapito C

Anal Chem. 2026 09 1;98(34):24843-24854

Instrument-Software Synergy in Proteomics: Systematic Evaluation across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods.

Heyndrickx S, Bouwmeester R, Declercq A, Devreese R, Palmblad M, Bittremieux W, Afanasyeva TA, Lapin J, Guler AT, Schmit PO, Carapito C, Martens L, Gabriels R

J Proteome Res. 2026 07 14;:

Impact of downstream purification process and AAV serotype on protein-impurity clearance.

Béard N, Rouby G G, Luc C, Thomas C, Vanthournout K, Dubreuil G, Loukili Z, Santambien P, Carapito C, Fragnoud R

Mol Ther Adv. 2026 06 11;34(2):201752

Therapeutic Poxviruses Induce the Secretion of Immunostimulating and Anti-Tumoral Extracellular Vesicles.

Walther L, Mittelheisser V, Claudepierre MC, Bochler L, Rompais M, Deforges J, Silvestre N, Larnicol A, Carapito C, Quémeneur E, Goetz JG, Rittner K, Hyenne V

J Extracell Vesicles. 2026 06;15(6):e70307

Tenascin-C orchestrates radiotherapy-induced head and neck tumor regression.

Loustau T, Mitrentsi I, Wang N, Spenlé C, Pavlidaki A, Tranchant T, Riegel G, Venu A, Oueidat R, Koch M, Dumas M, Wack F, Hirschler A, Carapito C, Paul N, Carapito R, Mörgelin M, Hansen U, Azzi J, Aubergeon L, Salomé N, Dhaouadi S, Grenot P, Bouhaouala-Zahar B, La Cioppa S, Oertle P, Izzi V, Plodinec M, Noel G, Burckel H, Orend G

EMBO Mol Med. 2026 03 31;:

Fine-Tuning of Label-Free Single-Cell Proteomics Workflows.

Perdu-Alloy P, Keller C, Seth A, Carapito C

J Proteome Res. 2026 03 4;:

Transfer learning in DeepLC improves LC retention time prediction across substantially different modifications and setups.

Bouwmeester R, Nameni A, Declercq A, Devreese R, Velghe K, Gorshkov V, Penanes PA, Kjeldsen F, Rompais M, Carapito C, Gabriels R, Martens L

Nat Commun. 2026 02 10;:

The PeptideAtlas Build: Characterizing the Observed Pan-Proteome and Its Post-Translational Modifications.

Jachmann C, Sun Z, Velghe K, Arsène-Ploetze F, Hirschler A, Zuallaert J, Carapito C, Bouwmeester R, Nieselt K, Deutsch EW, Martens L, Gabriels R, Van Den Bossche T

J Proteome Res. 2026 01 22;:

Brownotate, a Comprehensive Solution to Generate Protein Sequence Databases for Any Species.

Brown A, Burel A, Cianférani S, Carapito C, Bertile F

Proteomics. 2026 01 6;:e70094

Assessing the Nature of Human Brain-Derived Extracellular Vesicles on Synaptic Activity Via the Development of an Air-liquid Microfluidic Platform.

Bernou C, Iwasaki Y, Lutz W, Almeida G, Béchard E, Delalande F, Rompais M, Bouget J, Gorda B, Cazevieille C, Bare Y, Carapito C, Colomb S, Ganesh G, Gaudin R

Adv Sci (Weinh). 2025 10 5;:e11194

Beyond the ink: cellular and molecular effects of iron-based pigments on macrophages.

Vitipon M, Akingbagbohun E, Devime F, Diemer H, Hirschler A, Fenel D, Ravanel S, Carapito C, Rabilloud T

NanoImpact. 2025 08 2;39:100578

Nanomaterials Trigger Functional Anti-Tumoral Responses in Primary Human Immune Cells.

Mittelheisser V, Lefebvre O, Banerjee M, Ghosh S, Dupas A, Diringer MC, Blumberger J, Bochler L, Harlepp S, Larnicol A, Pichot A, Stemmelen T, Molitor A, Moritz C, Carapito C, Carapito R, Charbonnière LJ, Lux F, Tillement O, Goetz JG, Detappe A

Adv Sci (Weinh). 2025 07 12;:e05729

Peripheral positioning of lysosomes supports melanoma aggressiveness.

Jerabkova-Roda K, Peralta M, Huang KJ, Mousson A, Bourgeat Maudru C, Bochler L, Busnelli I, Karali R, Justiniano H, Lisii LM, Carl P, Mittelheisser V, Asokan N, Larnicol A, Lefebvre O, Lachuer H, Pichot A, Stemmelen T, Molitor A, Scheid L, Frenger Q, Gros F, Hirschler A, Delalande F, Sick E, Carapito R, Carapito C, Lipsker D, Schauer K, Rondé P, Hyenne V, Goetz JG

Nat Commun. 2025 04 9;16(1):3375

Holdup Multiplex Assay for High-Throughput Measurement of Protein-Ligand Affinity Constants Using a Mass Spectrometry Readout.

Delalande F, Østergaard SR, Gogl G, Cousido-Siah A, McEwen AG, Men Y, Salimova F, Rohrbacher A, Kostmann C, Nominé Y, Vincentelli R, Eberling P, Carapito C, Travé G, Monsellier E

J Am Chem Soc. 2025 03 24;:

TIMSRescore: A Data Dependent Acquisition-Parallel Accumulation and Serial Fragmentation-Optimized Data-Driven Rescoring Pipeline Based on MSRescore.

Declercq A, Devreese R, Scheid J, Jachmann C, Van Den Bossche T, Preikschat A, Gomez-Zepeda D, Rijal JB, Hirschler A, Krieger JR, Srikumar T, Rosenberger G, Martelli C, Trede D, Carapito C, Tenzer S, Walz JS, Degroeve S, Bouwmeester R, Martens L, Gabriels R

J Proteome Res. 2025 02 6;:

Accelerated aging modulates the toxicological properties of the diazo tattoo pigment PO13.

Aubry L, Vitipon M, Hirschler A, Diemer H, Rabilloud T, Carapito C, Douki T

Sci Rep. 2025 01 3;15(1):695

Astrogliosis and neuroinflammation underlie scoliosis upon cilia dysfunction.

Djebar M, Anselme I, Pezeron G, Bardet PL, Cantaut-Belarif Y, Eschstruth A, López-Santos D, Le Ribeuz H, Jenett A, Khoury H, Veziers J, Parmentier C, Hirschler A, Carapito C, Bachmann-Gagescu R, Schneider-Maunoury S, Vesque C

Elife. 2024 10 10;13:

A pleiotropic recurrent dominant variant causes a complex multisystemic disease.

Molitor A, Lederle A, Radosavljevic M, Sapuru V, Zavorka Thomas ME, Yang J, Shirin M, Collin-Bund V, Jerabkova-Roda K, Miao Z, Bernard A, Rolli V, Grenot P, Castro CN, Rosenzwajg M, Lewis EG, Person R, Esperón-Moldes US, Kaare M, Nokelainen PT, Batzir NA, Hoffer GZ, Paul N, Stemmelen T, Naegely L, Hanauer A, Bibi-Triki S, Grün S, Jung S, Busnelli I, Tripolszki K, Al-Ali R, Ordonez N, Bauer P, Song E, Zajo K, Partida-Sanchez S, Robledo-Avila F, Kumanovics A, Louzoun Y, Hirschler A, Pichot A, Toker O, Mejía CAM, Parvaneh N, Knapp E, Hersh JH, Kenney H, Delmonte OM, Notarangelo LD, Goetz JG, Kahwash SB, Carapito C, Bajwa RPS, Thomas C, Ehl S, Isidor B, Carapito R, Abraham RS, Hite RK, Marcus N, Bertoli-Avella A, Bahram S

Sci Adv. 2024 09 13;10(37):eado5545

Proteomic profiling of Arabidopsis nuclei reveals distinct protein accumulation kinetics upon heat stress.

Muñoz-Díaz E, Fuenzalida-Valdivia I, Darrière T, de Bures A, Blanco-Herrera F, Rompais M, Carapito C, Sáez-Vásquez J

Sci Rep. 2024 08 14;14(1):18914

Multiomic ALS signatures highlight subclusters and sex differences suggesting the MAPK pathway as therapeutic target.

Caldi Gomes L, Hänzelmann S, Hausmann F, Khatri R, Oller S, Parvaz M, Tzeplaeff L, Pasetto L, Gebelin M, Ebbing M, Holzapfel C, Columbro SF, Scozzari S, Knöferle J, Cordts I, Demleitner AF, Deschauer M, Dufke C, Sturm M, Zhou Q, Zelina P, Sudria-Lopez E, Haack TB, Streb S, Kuzma-Kozakiewicz M, Edbauer D, Pasterkamp RJ, Laczko E, Rehrauer H, Schlapbach R, Carapito C, Bonetto V, Bonn S, Lingor P

Nat Commun. 2024 06 7;15(1):4893

Brain exposure to SARS-CoV-2 virions perturbs synaptic homeostasis.

Partiot E, Hirschler A, Colomb S, Lutz W, Claeys T, Delalande F, Deffieu MS, Bare Y, Roels JRE, Gorda B, Bons J, Callon D, Andreoletti L, Labrousse M, Jacobs FMJ, Rigau V, Charlot B, Martens L, Carapito C, Ganesh G, Gaudin R

Nat Microbiol. 2024 03 28;:

Thunder-DDA-PASEF enables high-coverage immunopeptidomics and is boosted by MSRescore with MSPIP timsTOF fragmentation prediction model.

Gomez-Zepeda D, Arnold-Schild D, Beyrle J, Declercq A, Gabriels R, Kumm E, Preikschat A, Łącki MK, Hirschler A, Rijal JB, Carapito C, Martens L, Distler U, Schild H, Tenzer S

Nat Commun. 2024 03 13;15(1):2288

A dataset profiling the multiomic landscape of the prefrontal cortex in amyotrophic lateral sclerosis.

Hausmann F, Caldi Gomes L, Hänzelmann S, Khatri R, Oller S, Gebelin M, Parvaz M, Tzeplaeff L, Pasetto L, Zhou Q, Zelina P, Edbauer D, Pasterkamp RJ, Rehrauer H, Schlapbach R, Carapito C, Bonetto V, Bonn S, Lingor P

Gigascience. 2024 01 2;13:

msqrob2PTM: differential abundance and differential usage analysis of MS-based proteomics data at the post-translational modification and peptidoform level.

Demeulemeester N, Gébelin M, Caldi Gomes L, Lingor P, Carapito C, Martens L, Clement L

Mol Cell Proteomics. 2023 12 26;:100708

Improved characterization of trastuzumab deruxtecan with PTCR and internal fragments implemented in middle-down MS workflows.

Beaumal C, Deslignière E, Diemer H, Carapito C, Cianférani S, Hernandez-Alba O

Anal Bioanal Chem. 2023 11 27;:

Mechanistic insights into sulfur source-driven physiological responses and metabolic reorganization in the fuel-biodesulfurizing IGTS8.

Zumsteg J, Hirschler A, Carapito C, Maurer L, Villette C, Heintz D, Dahl C, El Nayal A, Sangal V, Mahmoud H, Van Dorsselaer A, Ismail W

Appl Environ Microbiol. 2023 09 1;:e0082623

N 2-methylguanosine modifications on human tRNAs and snRNA U6 are important for cell proliferation, protein translation and pre-mRNA splicing.

Wang C, Ulryck N, Herzel L, Pythoud N, Kleiber N, Guérineau V, Jactel V, Moritz C, Bohnsack MT, Carapito C, Touboul D, Bohnsack KE, Graille M

Nucleic Acids Res. 2023 06 7;:

Advanced mass spectrometry workflows for accurate quantification of trace-level host cell proteins in drug products: Benefits of FAIMS separation and gas-phase fractionation DIA.

Beaumal C, Beck A, Hernandez-Alba O, Carapito C

Proteomics. 2023 05 6;:e2300172

Updated MS²PIP web server supports cutting-edge proteomics applications.

Declercq A, Bouwmeester R, Chiva C, Sabidó E, Hirschler A, Carapito C, Martens L, Degroeve S, Gabriels R

Nucleic Acids Res. 2023 05 4;:

Host cell protein quantification workflow using optimized standards combined with data-independent acquisition mass spectrometry.

Hessmann S, Chery C, Sikora AS, Gervais A, Carapito C

J Pharm Anal. 2023 05;13(5):494-502

Towards a More Accurate Differential Analysis of Multiple Imputed Proteomics Data with mi4limma.

Chion M, Carapito C, Bertrand F

Methods Mol Biol. 2023 ;2426:131-140

Accounting for multiple imputation-induced variability for differential analysis in mass spectrometry-based label-free quantitative proteomics.

Chion M, Carapito C, Bertrand F

PLoS Comput Biol. 2022 08 29;18(8):e1010420

MSRescore: Data-driven rescoring dramatically boosts immunopeptide identification rates.

Declercq A, Bouwmeester R, Hirschler A, Carapito C, Degroeve S, Martens L, Gabriels R

Mol Cell Proteomics. 2022 07 5;:100266

Upon heat stress processing of ribosomal RNA precursors into mature rRNAs is compromised after cleavage at primary P site in a.

Darriere T, Jobet E, Zavala D, Escande ML, Durut N, de Bures A, Blanco-Herrera F, Vidal EA, Rompais M, Carapito C, Gourbiere S, Sáez-Vásquez J

RNA Biol. 2022 Jan;19(1):719-734

ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis.

Imbert A, Rompais M, Selloum M, Castelli F, Mouton-Barbosa E, Brandolini-Bunlon M, Chu-Van E, Joly C, Hirschler A, Roger P, Burger T, Leblanc S, Sorg T, Ouzia S, Vandenbrouck Y, Médigue C, Junot C, Ferro M, Pujos-Guillot E, de Peredo AG, Fenaille F, Carapito C, Herault Y, Thévenot EA

Sci Data. 2021 Dec 3;8(1):311

Identification of driver genes for critical forms of COVID-19 in a deeply phenotyped young patient cohort.

Carapito R, Li R, Helms J, Carapito C, Gujja S, Rolli V, Guimaraes R, Malagon-Lopez J, Spinnhirny P, Lederle A, Mohseninia R, Hirschler A, Muller L, Bastard P, Gervais A, Zhang Q, Danion F, Ruch Y, Schenck M, Collange O, Chamaraux-Tran TN, Molitor A, Pichot A, Bernard A, Tahar O, Bibi-Triki S, Wu H, Paul N, Mayeur S, Larnicol A, Laumond G, Frappier J, Schmidt S, Hanauer A, Macquin C, Stemmelen T, Simons M, Mariette X, Hermine O, Fafi-Kremer S, Goichot B, Drenou B, Kuteifan K, Pottecher J, Mertes PM, Kailasan S, Aman MJ, Pin E, Nilsson P, Thomas A, Viari A, Sanlaville D, Schneider F, Sibilia J, Tharaux PL, Casanova JL, Hansmann Y, Lidar D, Radosavljevic M, Gulcher JR, Meziani F, Moog C, Chittenden TW, Bahram S

Sci Transl Med. 2021 Oct 26;:eabj7521

Biodesulfurization Induces Reprogramming of Sulfur Metabolism in Rhodococcus qingshengii IGTS8: Proteomics and Untargeted Metabolomics.

Hirschler A, Carapito C, Maurer L, Zumsteg J, Villette C, Heintz D, Dahl C, Al-Nayal A, Sangal V, Mahmoud H, Van Dorsselaer A, Ismail W

Microbiol Spectr. 2021 Sep 1;:e0069221

Temporal multiomic modeling reveals a B-cell receptor proliferative program in chronic lymphocytic leukemia.

Schleiss C, Carapito R, Fornecker LM, Muller L, Paul N, Tahar O, Pichot A, Tavian M, Nicolae A, Miguet L, Mauvieux L, Herbrecht R, Cianferani S, Freund JN, Carapito C, Maumy-Bertrand M, Bahram S, Bertrand F, Vallat L

Leukemia. 2021 Apr 8;:

Combining label-free and label-based accurate quantifications with SWATH-MS: comparison with SRM and PRM for the evaluation of bovine muscle type effects.

Bons J, Husson G, Chion M, Bonnet M, Maumy-Bertrand M, Delalande F, Cianférani S, Bertrand F, Picard B, Carapito C

Proteomics. 2021 Mar 18;:e2000214

A proteomic view of cellular responses of macrophages to copper when added as ion or as copper-polyacrylate complex.

Dalzon B, Devcic J, Bons J, Torres A, Diemer H, Ravanel S, Collin-Faure V, Cianférani S, Carapito C, Rabilloud T

J Proteomics. 2021 Mar 1;239:104178

Mapping rRNA 2'-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants.

Azevedo-Favory J, Gaspin C, Ayadi L, Montacié C, Marchand V, Jobet E, Rompais M, Carapito C, Motorin Y, Sáez-Vásquez J

RNA Biol. 2021 Feb 17;:1-18

Ral GTPases promote breast cancer metastasis by controlling biogenesis and organ targeting of exosomes.

Ghoroghi S, Mary B, Larnicol A, Asokan N, Klein A, Osmani N, Busnelli I, Delalande F, Paul N, Halary S, Gros F, Fouillen L, Haeberle AM, Royer C, Spiegelhalter C, André-Grégoire G, Mittelheisser V, Detappe A, Murphy K, Timpson P, Carapito R, Blot-Chabaud M, Gavard J, Carapito C, Vitale N, Lefebvre O, Goetz JG, Hyenne V

Elife. 2021 Jan 6;10:

Rab7-harboring vesicles are carriers of the transferrin receptor through the biosynthetic secretory pathway.

Deffieu MS, Cesonyte I, Delalande F, Boncompain G, Dorobantu C, Song E, Lucansky V, Hirschler A, Cianferani S, Perez F, Carapito C, Gaudin R

Sci Adv. 2021 Jan;7(2):

NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation.

Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, Miao Z, Groß M, Tranchant T, Radosavljevic M, Paul N, Stemmelen T, Pitoiset F, Hirschler A, Nespola B, Molitor A, Rolli V, Pichot A, Faletti LE, Rinaldi B, Friant S, Mednikov M, Karauzum H, Aman MJ, Carapito C, Lengerke C, Ziaee V, Eyaid W, Ehl S, Alroqi F, Parvaneh N, Bahram S

J. Exp. Med.. 2020 Dec 7;217(12):

The catalytic activity of the translation termination factor methyltransferase Mtq2-Trm112 complex is required for large ribosomal subunit biogenesis.

Lacoux C, Wacheul L, Saraf K, Pythoud N, Huvelle E, Figaro S, Graille M, Carapito C, Lafontaine DLJ, Heurgué-Hamard V

Nucleic Acids Res. 2020 Nov 9;:

Optimized Sample Preparation and Data Processing of Data-Independent Acquisition Methods for the Robust Quantification of Trace-Level Host Cell Protein Impurities in Antibody Drug Products.

Pythoud N, Bons J, Mijola G, Beck A, Cianférani S, Carapito C

J Proteome Res. 2020 Oct 4;:

Precise alkoxyamine-design enables automated tandem mass spectrometry sequencing of digital poly(phosphodiester)s.

Launay K, Amalian JA, Laurent E, Oswald L, Al Ouahabi A, Burel A, Dufour F, Carapito C, Clément JL, Lutz JF, Charles L, Gigmes D

Angew. Chem. Int. Ed. Engl.. 2020 Sep 22;:

Tenascin-C orchestrates an immune suppressive tumor microenvironment in oral squamous cell carcinoma.

Spenlé C, Loustau T, Murdamoothoo D, Erne W, Beghelli-de la Forest Divonne S, Veber R, Petti L, Bourdely P, Mörgelin M, Brauchle EM, Crémel G, Randrianarisoa V, Camara A, Rekima S, Schaub S, Nouhen K, Imhof T, Hansen U, Paul N, Carapito R, Pythoud N, Hirschler A, Carapito C, Dumortier H, Mueller CG, Koch M, Schenke-Layland K, Kon S, Sudaka A, Anjuere F, Van Obberghen-Schilling E, Orend G

Cancer Immunol Res. 2020 Jul 14;:

Optimal conditions for MS/MS sequencing of information-containing N-substituted polyurethanes.

Charles L, Mondal T, Greff V, Razzini M, Monnier V, Burel A, Carapito C, Lutz JF

Rapid Commun. Mass Spectrom.. 2020 Apr 20;:e8815

Proline: an efficient and user-friendly software suite for large-scale proteomics.

Bouyssié D, Hesse AM, Mouton-Barbosa E, Rompais M, Macron C, Carapito C, de Peredo AG, Couté Y, Dupierris V, Burel A, Menetrey JP, Kalaitzakis A, Poisat J, Romdhani A, Burlet-Schiltz O, Cianférani S, Garin J, Bruley C

Bioinformatics. 2020 Feb 25;:

Quantification of biomarkers for beef meat qualities using a combination of Parallel Reaction Monitoring- and antibody-based proteomics.

Bonnet M, Soulat J, Bons J, Léger S, De Koning L, Carapito C, Picard B

Food Chem. 2020 Feb 10;317:126376

Phylogenomic Classification and Biosynthetic Potential of the Fossil Fuel-Biodesulfurizing Strain IGTS8.

Thompson D, Cognat V, Goodfellow M, Koechler S, Heintz D, Carapito C, Van Dorsselaer A, Mahmoud H, Sangal V, Ismail W

Front Microbiol. 2020 ;11:1417

Zika virus enhances monocyte adhesion and transmigration favoring viral dissemination to neural cells.

Ayala-Nunez NV, Follain G, Delalande F, Hirschler A, Partiot E, Hale GL, Bollweg BC, Roels J, Chazal M, Bakoa F, Carocci M, Bourdoulous S, Faklaris O, Zaki SR, Eckly A, Uring-Lambert B, Doussau F, Cianferani S, Carapito C, Jacobs FMJ, Jouvenet N, Goetz JG, Gaudin R

Nat Commun. 2019 Sep 27;10(1):4430

A Proteomic View of Cellular Responses to Anticancer Quinoline-Copper Complexes.

Dalzon B, Bons J, Diemer H, Collin-Faure V, Marie-Desvergne C, Dubosson M, Cianferani S, Carapito C, Rabilloud T

Proteomes. 2019 Jun 24;7(2):

A Combined N-terminomics and Shotgun Proteomics Approach to Investigate the Responses of Human Cells to Rapamycin and Zinc at the Mitochondrial Level.

Bons J, Macron C, Aude-Garcia C, Alvaro Vaca-Jacome S, Rompais M, Cianférani S, Carapito C, Rabilloud T

Mol. Cell Proteomics. 2019 Jun;18(6):1085-1095

A Combined N-terminomics and Shotgun Proteomics Approach to Investigate the Responses of Human Cells to Rapamycin and Zinc at the Mitochondrial Level.

Bons J, Macron C, Aude-Garcia C, Vaca-Jacome SA, Rompais M, Cianférani S, Carapito C, Rabilloud T

Mol Cell Proteomics. 2019 Jun;18(6):1085-1095

A Combined N-terminomics and Shotgun Proteomics Approach to Investigate the Responses of Human Cells to Rapamycin and Zinc at the Mitochondrial Level.

Bons J, Macron C, Aude-Garcia C, Vaca-Jacome SA, Rompais M, Cianférani S, Carapito C, Rabilloud T

Mol Cell Proteomics. 2019 Jun;18(6):1085-1095

Studying the Fate of Tumor Extracellular Vesicles at High Spatiotemporal Resolution Using the Zebrafish Embryo.

Hyenne V, Ghoroghi S, Collot M, Bons J, Follain G, Harlepp S, Mary B, Bauer J, Mercier L, Busnelli I, Lefebvre O, Fekonja N, Garcia-Leon MJ, Machado P, Delalande F, López AA, Silva SG, Verweij FJ, van Niel G, Djouad F, Peinado H, Carapito C, Klymchenko AS, Goetz JG

Dev. Cell. 2019 Feb 4;:

Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma.

Fornecker LM, Muller L, Bertrand F, Paul N, Pichot A, Herbrecht R, Chenard MP, Mauvieux L, Vallat L, Bahram S, Cianférani S, Carapito R, Carapito C

Sci Rep. 2019 Jan 29;9(1):895

Cytosolic Isocitrate Dehydrogenase from Is Regulated by Glutathionylation.

Niazi AK, Bariat L, Riondet C, Carapito C, Mhamdi A, Noctor G, Reichheld JP

Antioxidants (Basel). 2019 Jan 8;8(1):

Tube-Gel: A Fast and Effective Sample Preparation Method for High-Throughput Quantitative Proteomics.

Muller L, Fornecker L, Cianferani S, Carapito C

Methods Mol. Biol.. 2019 ;1959:123-127

Multi-OMICS analyses unveil as a potential modifier gene in mevalonate kinase deficiency.

Carapito R, Carapito C, Morlon A, Paul N, Vaca Jacome AS, Alsaleh G, Rolli V, Tahar O, Aouadi I, Rompais M, Delalande F, Pichot A, Georgel P, Messer L, Sibilia J, Cianferani S, Van Dorsselaer A, Bahram S

Ann. Rheum. Dis.. 2018 Jul 20;:

Extended investigation of tube-gel sample preparation: a versatile and simple choice for high throughput quantitative proteomics.

Muller L, Fornecker L, Chion M, Van Dorsselaer A, Cianférani S, Rabilloud T, Carapito C

Sci Rep. 2018 May 29;8(1):8260

N-terminome and proteogenomic analysis of the Methylobacterium extorquens DM4 reference strain for dichloromethane utilization.

Bibi-Triki S, Husson G, Maucourt B, Vuilleumier S, Carapito C, Bringel F

J Proteomics. 2018 May 15;179:131-139

Cleavable Binary Dyads: Simplifying Data Extraction and Increasing Storage Density in Digital Polymers.

Cavallo G, Poyer S, Amalian JA, Dufour F, Burel A, Carapito C, Charles L, Lutz JF

Angew. Chem. Int. Ed. Engl.. 2018 Apr 6;:

Data-Independent Acquisition Coupled to Visible Laser-Induced Dissociation at 473 nm (DIA-LID) for Peptide-Centric Specific Analysis of Cysteine-Containing Peptide Subset.

Garcia L, Girod M, Rompais M, Dugourd P, Carapito C, Lemoine J

Anal. Chem.. 2018 Mar 20;90(6):3928-3935

Dual Data-Independent Acquisition Approach Combining Global HCP Profiling and Absolute Quantification of Key Impurities during Bioprocess Development.

Husson G, Delangle A, O'Hara J, Cianferani S, Gervais A, Van Dorsselaer A, Bracewell D, Carapito C

Anal. Chem.. 2018 Jan 16;90(2):1241-1247

Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods.

Carapito C, Duek P, Macron C, Seffals M, Rondel K, Delalande F, Lindskog C, Fréour T, Vandenbrouck Y, Lane L, Pineau C

J. Proteome Res.. 2017 Dec 1;16(12):4340-4351

The siRNA suppressor RTL1 is redox-regulated through glutathionylation of a conserved cysteine in the double-stranded-RNA-binding domain.

Charbonnel C, Niazi AK, Elvira-Matelot E, Nowak E, Zytnicki M, de Bures A, Jobet E, Opsomer A, Shamandi N, Nowotny M, Carapito C, Reichheld JP, Vaucheret H, Sáez-Vásquez J

Nucleic Acids Res.. 2017 Nov 16;45(20):11891-11907

Two proteomic methodologies for defining N-termini of mature human mitochondrial aminoacyl-tRNA synthetases.

Carapito C, Kuhn L, Karim L, Rompais M, Rabilloud T, Schwenzer H, Sissler M

Methods. 2017 Jan 15;113:111-119

A community proposal to integrate proteomics activities in ELIXIR.

Vizcaíno JA, Walzer M, Jiménez RC, Bittremieux W, Bouyssié D, Carapito C, Corrales F, Ferro M, Heck AJR, Horvatovich P, Hubalek M, Lane L, Laukens K, Levander F, Lisacek F, Novak P, Palmblad M, Piovesan D, Pühler A, Schwämmle V, Valkenborg D, van Rijswijk M, Vondrasek J, Eisenacher M, Martens L, Kohlbacher O

F1000Res. 2017 ;6:

Doublet N-Terminal Oriented Proteomics for N-Terminomics and Proteolytic Processing Identification.

Westermann B, Jacome ASV, Rompais M, Carapito C, Schaeffer-Reiss C

Methods Mol. Biol.. 2017 ;1574:77-90

Nucleolar Proteome Analysis and Proteasomal Activity Assays Reveal a Link between Nucleolus and 26S Proteasome in .

Montacié C, Durut N, Opsomer A, Palm D, Comella P, Picart C, Carpentier MC, Pontvianne F, Carapito C, Schleiff E, Sáez-Vásquez J

Front Plant Sci. 2017 ;8:1815

Benchmarking sample preparation/digestion protocols reveals tube-gel being a fast and repeatable method for quantitative proteomics.

Muller L, Fornecker L, Van Dorsselaer A, Cianférani S, Carapito C

Proteomics. 2016 Dec;16(23):2953-2961

Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update.

Vandenbrouck Y, Lane L, Carapito C, Duek P, Rondel K, Bruley C, Macron C, Gonzalez de Peredo A, Couté Y, Chaoui K, Com E, Gateau A, Hesse AM, Marcellin M, Méar L, Mouton-Barbosa E, Robin T, Burlet-Schiltz O, Cianferani S, Ferro M, Fréour T, Lindskog C, Garin J, Pineau C

J. Proteome Res.. 2016 Nov;15(11):3998-4019

MetAP1 and MetAP2 drive cell selectivity for a potent anti-cancer agent in synergy, by controlling glutathione redox state.

Frottin F, Bienvenut WV, Bignon J, Jacquet E, Vaca Jacome AS, Van Dorsselaer A, Cianferani S, Carapito C, Meinnel T, Giglione C

Oncotarget. 2016 Sep;7(39):63306-63323

Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome.

Kusebauch U, Campbell DS, Deutsch EW, Chu CS, Spicer DA, Brusniak MY, Slagel J, Sun Z, Stevens J, Grimes B, Shteynberg D, Hoopmann MR, Blattmann P, Ratushny AV, Rinner O, Picotti P, Carapito C, Huang CY, Kapousouz M, Lam H, Tran T, Demir E, Aitchison JD, Sander C, Hood L, Aebersold R, Moritz RL

Cell. 2016 Jul 28;166(3):766-778

Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods.

Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A

Data Brief. 2016 Mar;6:286-94

Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset.

Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Van Dorssaeler A, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A

J Proteomics. 2016 Jan;132:51-62

Spatio-Temporal Detection of the Thiomonas Population and the Thiomonas Arsenite Oxidase Involved in Natural Arsenite Attenuation Processes in the Carnoulès Acid Mine Drainage.

Hovasse A, Bruneel O, Casiot C, Desoeuvre A, Farasin J, Hery M, Van Dorsselaer A, Carapito C, Arsène-Ploetze F

Front Cell Dev Biol. 2016 ;4:3

Proteomic tools to decipher microbial community structure and functioning.

Arsène-Ploetze F, Bertin PN, Carapito C

Environ Sci Pollut Res Int. 2015 Sep;22(18):13599-612

Impact of anatase and rutile titanium dioxide nanoparticles on uptake carriers and efflux pumps in Caco-2 gut epithelial cells.

Dorier M, Brun E, Veronesi G, Barreau F, Pernet-Gallay K, Desvergne C, Rabilloud T, Carapito C, Herlin-Boime N, Carrière M

Nanoscale. 2015 Apr 28;7(16):7352-60

Phosphonated chelates for nuclear imaging.

Abada S, Lecointre A, Christine C, Ehret-Sabatier L, Saupe F, Orend G, Brasse D, Ouadi A, Hussenet T, Laquerrière P, Elhabiri M, Charbonnière LJ

Org. Biomol. Chem.. 2014 Dec;12(47):9601-20

Comparative expression study of the endo-G protein coupled receptor (GPCR) repertoire in human glioblastoma cancer stem-like cells, U87-MG cells and non malignant cells of neural origin unveils new potential therapeutic targets.

Feve M, Saliou JM, Zeniou M, Lennon S, Carapito C, Dong J, Van Dorsselaer A, Junier MP, Chneiweiss H, Cianferani S, Haiech J, Kilhoffer MC

PLoS One. 2014 Mar 24;9(3):e91519

Cell-surface expression of the TLR homolog CD180 in circulating cells from splenic and nodal marginal zone lymphomas.

Miguet L, Lennon S, Baseggio L, Traverse-Glehen A, Berger F, Perrusson N, Chenard MP, Galoisy AC, Eischen A, Mayeur-Rousse C, Maar A, Fornecker L, Herbrecht R, Felman P, Van Dorsselaer A, Carapito C, Cianférani S, Mauvieux L

Leukemia. 2013 Aug;27(8):1748-50

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