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Fine-Tuning of Label-Free Single-Cell Proteomics Workflows.

Perdu-Alloy P, Keller C, Seth A, Carapito C

J Proteome Res. 2026 03 4;:

Transfer learning in DeepLC improves LC retention time prediction across substantially different modifications and setups.

Bouwmeester R, Nameni A, Declercq A, Devreese R, Velghe K, Gorshkov V, Penanes PA, Kjeldsen F, Rompais M, Carapito C, Gabriels R, Martens L

Nat Commun. 2026 02 10;:

The PeptideAtlas Build: Characterizing the Observed Pan-Proteome and Its Post-Translational Modifications.

Jachmann C, Sun Z, Velghe K, Arsène-Ploetze F, Hirschler A, Zuallaert J, Carapito C, Bouwmeester R, Nieselt K, Deutsch EW, Martens L, Gabriels R, Van Den Bossche T

J Proteome Res. 2026 01 22;:

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