An Efficient Protocol for CUT&RUN Analysis of FACS-Isolated Mouse Satellite Cells.
Fiche publication
Date publication
juillet 2023
Journal
Journal of visualized experiments : JoVE
Auteurs
Membres identifiés du Cancéropôle Est :
Mme EBEL Claudine, Dr METZGER Daniel, Dr SCHREIBER Valérie
Tous les auteurs :
Ghaibour K, Rizk J, Ebel C, Ye T, Philipps M, Schreiber V, Metzger D, Duteil D
Lien Pubmed
Résumé
Genome-wide analyses with small cell populations are a major constraint for studies, particularly in the stem cell field. This work describes an efficient protocol for the fluorescence-activated cell sorting (FACS) isolation of satellite cells from the limb muscle, a tissue with a high content of structural proteins. Dissected limb muscles from adult mice were mechanically disrupted by mincing in medium supplemented with dispase and type I collagenase. Upon digestion, the homogenate was filtered through cell strainers, and cells were suspended in FACS buffer. Viability was determined with fixable viability stain, and immunostained satellite cells were isolated by FACS. Cells were lysed with Triton X-100 and released nuclei were bound to concanavalin A magnetic beads. Nucleus/bead complexes were incubated with antibodies against the transcription factor or histone modifications of interest. After washes, nucleus/bead complexes were incubated with protein A-micrococcal nuclease, and chromatin cleavage was initiated with CaCl2. After DNA extraction, libraries were generated and sequenced, and the profiles for genome-wide transcription factor binding and covalent histone modifications were obtained by bioinformatic analysis. The peaks obtained for the various histone marks showed that the binding events were specific for satellite cells. Moreover, known motif analysis unveiled that the transcription factor was bound to chromatin via its cognate response element. This protocol is therefore adapted to study gene regulation in adult mice limb muscle satellite cells.
Mots clés
Mice, Animals, Flow Cytometry, Satellite Cells, Skeletal Muscle, Genome-Wide Association Study, Chromatin, Transcription Factors
Référence
J Vis Exp. 2023 07 7;(197):