Spliceator: multi-species splice site prediction using convolutional neural networks.
Fiche publication
Date publication
novembre 2021
Journal
BMC bioinformatics
Auteurs
Membres identifiés du Cancéropôle Est :
Dr POCH Olivier, Dr THOMPSON Julie, Pr COLLET Pierre
Tous les auteurs :
Scalzitti N, Kress A, Orhand R, Weber T, Moulinier L, Jeannin-Girardon A, Collet P, Poch O, Thompson JD
Lien Pubmed
Résumé
Ab initio prediction of splice sites is an essential step in eukaryotic genome annotation. Recent predictors have exploited Deep Learning algorithms and reliable gene structures from model organisms. However, Deep Learning methods for non-model organisms are lacking.
Mots clés
Convolutional neural network, Data quality, Deep learning, Genome annotation, Splice site prediction
Référence
BMC Bioinformatics. 2021 Nov 23;22(1):561