A comprehensive resource for retrieving, visualizing, and integrating functional genomics data.
Fiche publication
Date publication
janvier 2020
Journal
Life science alliance
Auteurs
Membres identifiés du Cancéropôle Est :
Dr GRONEMEYER Hinrich, Dr MENDOZA Manuel
Tous les auteurs :
Blum M, Cholley PE, Malysheva V, Nicaise S, Moehlin J, Gronemeyer H, Mendoza-Parra MA
Lien Pubmed
Résumé
The enormous amount of freely accessible functional genomics data is an invaluable resource for interrogating the biological function of multiple DNA-interacting players and chromatin modifications by large-scale comparative analyses. However, in practice, interrogating large collections of public data requires major efforts for (i) reprocessing available raw reads, (ii) incorporating quality assessments to exclude artefactual and low-quality data, and (iii) processing data by using high-performance computation. Here, we present qcGenomics, a user-friendly online resource for ultrafast retrieval, visualization, and comparative analysis of tens of thousands of genomics datasets to gain new functional insight from global or focused multidimensional data integration.
Référence
Life Sci Alliance. 2020 Jan;3(1):