Improved Protocol for Chromatin Immunoprecipitation from Mouse Skeletal Muscle.
Fiche publication
Date publication
novembre 2017
Journal
Journal of visualized experiments : JoVE
Auteurs
Membres identifiés du Cancéropôle Est :
Dr DAVIDSON Irwin, Dr METZGER Daniel
Tous les auteurs :
Joshi S, Ueberschlag-Pitiot V, Metzger D, Davidson I
Lien Pubmed
Résumé
We describe an efficient and reproducible protocol for the preparation of chromatin from adult mouse skeletal muscle, a physically resistant tissue with a high content of structural proteins. Dissected limb muscles from adult mice are physically disrupted by mechanical homogenisation, or a combination of mincing and douncing, in a hypotonic buffer before formaldehyde fixation of the cell lysate. The fixed nuclei are purified by further cycles of mechanical homogenisation or douncing and sequential filtrations to remove cell debris. The purified nuclei can be sonicated immediately or at a later stage after freezing. The chromatin can be efficiently sonicated and is suitable for chromatin immunoprecipitation experiments, as illustrated by the profiles obtained for transcription factors, RNA polymerase II, and covalent histone modifications. The binding events detected using chromatin prepared by this protocol are predominantly those taking place in the muscle fiber nuclei despite the presence of chromatin from other fiber-associated satellite and endothelial cells. This protocol is therefore adapted to study gene regulation in the adult mouse skeletal muscle.
Mots clés
Animals, Chromatin Immunoprecipitation, methods, Mice, Muscle, Skeletal, metabolism
Référence
J Vis Exp. 2017 11 6;(129):