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From complex data to clear insights: visualizing molecular dynamics trajectories.

Belghit H, Spivak M, Dauchez M, Baaden M, Jonquet-Prevoteau J

Front Bioinform. 2024 04 11;4:1356659

validation of hyaluronic acid - drug conjugates based targeted drug delivery for the treatment of COVID-19.

Mani M, Vellusamy M, Rathinavel T, Vadivel P, Dauchez M, Khan R, Aroulmoji V

J Biomol Struct Dyn. 2024 03 27;:1-15

Structural and physical basis for the elasticity of elastin.

Depenveiller C, Baud S, Belloy N, Bochicchio B, Dandurand J, Dauchez M, Pepe A, Pomès R, Samouillan V, Debelle L

Q Rev Biophys. 2024 03 19;:1-78

Sialic acids cleavage induced by elastin-derived peptides impairs the interaction between insulin and its receptor in adipocytes 3T3-L1.

Guillot A, Toussaint K, Ebersold L, ElBtaouri H, Thiebault E, Issad T, Peiretti F, Maurice P, Sartelet H, Bennasroune A, Martiny L, Dauchez M, Duca L, Durlach V, Romier B, Baud S, Blaise S

J Physiol Biochem. 2024 02 23;:

Dual inhibitory mechanism of the truncated form of adenylyl cyclase 8 in cell signal integration: Structural and functional approaches.

Legueux-Cajgfinger Y, Velusamy M, Fathallah S, Vallin B, Duca L, Dauchez M, Vincent P, Limon I, Blaise R

Biochim Biophys Acta Mol Cell Res. 2023 11 26;:119645

Challenging Level Of Rigid-body Approach Involving Numerical Elements (CHLORAINE) applied to repeated elastin peptides.

Depenveiller C, Wong H, Crowet JM, Debelle L, Baud S, Dauchez M, Belloy N

J Struct Biol. 2023 06 19;:107986

Highlighting the hygroscopic capacities of apiogalacturonans.

Verzeaux L, Rao R, Vyumvuhore R, Belloy N, Aymard E, Baud S, Manfait M, Dauchez M, Closs B

J Mol Graph Model. 2023 05 24;123:108527

Modelling and Simulations of Extracellular Glycoproteins.

Rao RM, Belloy N, Crowet JM, Dauchez M, Baud S

Methods Mol Biol. 2023 ;2619:293-313

Differential MMP-14 Targeting by Biglycan, Decorin, Fibromodulin and Lumican Unraveled by In Silico Approach.

Rivet R, Rao RM, Nizet P, Belloy N, Huber L, Dauchez M, Ramont L, Baud S, Brézillon S

Am J Physiol Cell Physiol. 2022 12 19;:

How molecular modelling can better broaden the understanding of glycosylations.

Rao RM, Dauchez M, Baud S

Curr Opin Struct Biol. 2022 06 6;75:102393

Early Alterations of Intra-Mural Elastic Lamellae Revealed by Synchrotron X-ray Micro-CT Exploration of Diabetic Aortas.

Ben Zemzem A, Liang X, Vanalderwiert L, Bour C, Romier-Crouzet B, Blaise S, Sherratt MJ, Weitkamp T, Dauchez M, Baud S, Passat N, Debelle L, Almagro S

Int J Mol Sci. 2022 Mar 17;23(6):

Multiscale modelling of the extracellular matrix.

Wong H, Crowet JM, Dauchez M, Ricard-Blum S, Baud S, Belloy N

Matrix Biol Plus. 2022 Feb;13:100096

Anti-Toxoplasma gondii effect of lupane-type triterpenes from the bark of black alder (Alnus glutinosa) and identification of a potential target by reverse docking.

Darme P, Escotte-Binet S, Cordonnier J, Remy S, Hubert J, Sayagh C, Borie N, Villena I, Voutquenne-Nazabadioko L, Dauchez M, Baud S, Renault JH, Aubert D

Parasite. 2022 ;29:7

X-ray microtomography reveals a lattice-like network within aortic elastic lamellae.

Ben Zemzem A, Genevaux A, Wahart A, Bodey AJ, Blaise S, Romier-Crouzet B, Jonquet J, Bour C, Cogranne R, Beauseroy P, Dauchez M, Sherratt MJ, Debelle L, Almagro S

FASEB J. 2021 Oct;35(10):e21844

Differential MMP-14 Targeting by Lumican-Derived Peptides Unraveled by In Silico Approach.

Dauvé J, Belloy N, Rivet R, Etique N, Nizet P, Pietraszek-Gremplewicz K, Karamanou K, Dauchez M, Ramont L, Brézillon S, Baud S

Cancers (Basel). 2021 Sep 30;13(19):

Effects of changes in glycan composition on glycoprotein dynamics: example of N-glycans on insulin receptor.

Rao RM, Wong H, Dauchez M, Baud S

Glycobiology. 2021 Jul 30;:

AMIDE v2: High-Throughput Screening Based on AutoDock-GPU and Improved Workflow Leading to Better Performance and Reliability.

Darme P, Dauchez M, Renard A, Voutquenne-Nazabadioko L, Aubert D, Escotte-Binet S, Renault JH, Villena I, Steffenel LA, Baud S

Int J Mol Sci. 2021 Jul 13;22(14):

LIMONADA: A database dedicated to the simulation of biological membranes.

Crowet JM, Buchoux S, Belloy N, Sarazin C, Lins L, Dauchez M

J Comput Chem. 2021 Mar 11;:

Blending Ferulic Acid Derivatives and Polylactic Acid into Biobased and Transparent Elastomeric Materials with Shape Memory Properties.

Gallos A, Crowet JM, Michely L, Raghuwanshi VS, Mention MM, Langlois V, Dauchez M, Garnier G, Allais F

Biomacromolecules. 2021 Mar 10;:

Structural Analysis of Nonapeptides Derived from Elastin.

Hernández B, Crowet JM, Thiery J, Kruglik SG, Belloy N, Baud S, Dauchez M, Debelle L

Biophys. J.. 2020 Apr 25;:

Transmembrane Peptides as a New Strategy to Inhibit Neuraminidase-1 Activation.

Albrecht C, Kuznetsov AS, Appert-Collin A, Dhaideh Z, Callewaert M, Bershatsky YV, Urban AS, Bocharov EV, Bagnard D, Baud S, Blaise S, Romier-Crouzet B, Efremov RG, Dauchez M, Duca L, Gueroult M, Maurice P, Bennasroune A

Front Cell Dev Biol. 2020 ;8:611121

Umbrella Visualization: a method of analysis dedicated to glycan flexibility with UnityMol.

Besançon C, Guillot A, Blaise S, Dauchez M, Belloy N, Prévoteau-Jonquet J, Baud S

Methods. 2019 Jul 11;:

Low-diluted Phenacetinum disrupted the melanoma cancer cell migration.

Fuselier C, Terryn C, Berquand A, Crowet JM, Bonnomet A, Molinari M, Dauchez M, Martiny L, Schneider C

Sci Rep. 2019 Jun 24;9(1):9109

A Three-Dimensional Model of Human Lysyl Oxidase, a Cross-Linking Enzyme.

Vallet SD, Guéroult M, Belloy N, Dauchez M, Ricard-Blum S

ACS Omega. 2019 May 31;4(5):8495-8505

Exploring the Dual Interaction of Natural Rhamnolipids with Plant and Fungal Biomimetic Plasma Membranes through Biophysical Studies.

Monnier N, Furlan AL, Buchoux S, Deleu M, Dauchez M, Rippa S, Sarazin C

Int J Mol Sci. 2019 Feb 26;20(5):

Linoleic and linolenic acid hydroperoxides interact differentially with biomimetic plant membranes in a lipid specific manner.

Deleu M, Deboever E, Nasir MN, Crowet JM, Dauchez M, Ongena M, Jijakli H, Fauconnier ML, Lins L

Colloids Surf B Biointerfaces. 2018 Dec 7;175:384-391

Conformation-dependent binding of a Tetrastatin peptide to αβ integrin decreases melanoma progression through FAK/PIK/Akt pathway inhibition.

Lambert E, Fuselier E, Ramont L, Brassart B, Dukic S, Oudart JB, Dupont-Deshorgue A, Sellier C, Machado C, Dauchez M, Monboisse JC, Maquart FX, Baud S, Brassart-Pasco S

Sci Rep. 2018 Jun 29;8(1):9837

Mesoscopic Rigid Body Modelling of the Extracellular Matrix Self-Assembly.

Wong H, Prévoteau-Jonquet J, Baud S, Dauchez M, Belloy N

J Integr Bioinform. 2018 Jun 11;:

Exploring the aglycone subsite of a GH11 xylanase for the synthesis of xylosides by transglycosylation reactions.

Brusa C, Belloy N, Gérard D, Muzard M, Dauchez M, Plantier-Royon R, Rémond C

J. Biotechnol.. 2018 Apr 20;272-273:56-63

Structure and dynamics of the peptide strand KRFK from the thrombospondin TSP-1 in water.

Taleb Bendiab W, Benomrane B, Bounaceur B, Dauchez M, Krallafa AM

J Mol Model. 2018 Feb 14;24(3):54

Small leucine-rich proteoglycans and matrix metalloproteinase-14: Key partners?

Pietraszek-Gremplewicz K, Karamanou K, Niang A, Dauchez M, Belloy N, Maquart FX, Baud S, Brézillon S

Matrix Biol.. 2017 Dec 15;:

Privileged hydration sites in aromatic side chains: effect on conformational equilibrium.

Hernández B, Pflüger F, Dauchez M, Ghomi M

Phys Chem Chem Phys. 2017 Nov 1;19(42):28684-28695

Intrinsic dynamics study identifies two amino acids of TIMP-1 critical for its LRP-1-mediated endocytosis in neurons.

Verzeaux L, Belloy N, Thevenard-Devy J, Devy J, Ferracci G, Martiny L, Dedieu S, Dauchez M, Emonard H, Etique N, Devarenne-Charpentier E

Sci Rep. 2017 Jul;7(1):5375

New Insights into Molecular Organization of Human Neuraminidase-1: Transmembrane Topology and Dimerization Ability.

Maurice P, Baud S, Bocharova OV, Bocharov EV, Kuznetsov AS, Kawecki C, Bocquet O, Romier B, Gorisse L, Ghirardi M, Duca L, Blaise S, Martiny L, Dauchez M, Efremov RG, Debelle L

Sci Rep. 2016 Dec;6:38363

Impact of sialic acids on the molecular dynamic of bi-antennary and tri-antennary glycans.

Guillot A, Dauchez M, Belloy N, Jonquet J, Duca L, Romier B, Maurice P, Debelle L, Martiny L, Durlach V, Baud S, Blaise S

Sci Rep. 2016 Oct;6:35666

Identification of TAX2 peptide as a new unpredicted anti-cancer agent.

Jeanne A, Sick E, Devy J, Floquet N, Belloy N, Theret L, Boulagnon-Rombi C, Diebold MD, Dauchez M, Martiny L, Schneider C, Dedieu S

Oncotarget. 2015 May 22.

Tuning self-assembly in elastin-derived peptides.

Bochicchio B, Pepe A, Crudele M, Belloy N, Baud S, Dauchez M

Soft Matter. 2015 Mar 26.

Molecular dynamics of the salt dependence of a cold-adapted enzyme: endonuclease I.

Benrezkallah D, Dauchez M, Krallafa AM

J Biomol Struct Dyn. 2015 Feb 3:1-11.

Plasmin releases the anti-tumor peptide from the NC1 domain of collagen XIX.

Oudart JB, Brassart-Pasco S, Vautrin A, Sellier C, Machado C, Dupont-Deshorgue A, Brassart B, Baud S, Dauchez M, Monboisse JC, Harakat D, Maquart FX, Ramont L

Oncotarget. 2015 Jan 21.

Elastin-derived peptides are new regulators of insulin resistance development in mice.

Blaise S, Romier B, Kawecki C, Ghirardi M, Rabenoelina F, Baud S, Duca L, Maurice P, Heinz A, Schmelzer CE, Tarpin M, Martiny L, Garbar C, Dauchez M, Debelle L, Durlach V

Diabetes. 2013 Nov;62(11):3807-16

A crucial role for Lyn in TIMP-1 erythroid cell survival signalling pathway.

Bridoux L, Etique N, Lambert E, Thevenard J, Sowa ML, Belloy N, Dauchez M, Martiny L, Charpentier E

FEBS Lett. 2013 May 21;587(10):1524-8

Elastin peptides in aging and pathological conditions.

Baud S, Duca L, Bochicchio B, Brassart B, Belloy N, Pepe A, Dauchez M, Martiny L, Debelle L

Biomol Concepts. 2013 Feb;4(1):65-76

Amyloidogenesis of proteolytic fragments of human elastin.

Bochicchio B, Pepe A, Delaunay F, Lorusso M, Baud S, Dauchez M

Rsc Adv. 2013;3(32):13273-85.

Interaction between the elastin peptide VGVAPG and human elastin binding protein.

Blanchevoye C, Floquet N, Scandolera A, Baud S, Maurice P, Bocquet O, Blaise S, Ghoneim C, Cantarelli B, Delacoux F, Dauchez M, Efremov RG, Martiny L, Duca L, Debelle L

J Biol Chem. 2013 Jan 11;288(2):1317-28